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Center for Computational Biomedicine

DEI package

The experimental datasets and source code for pharmacokinetic drug enzyme interaction relation extraction from biomedical literature, as applied in the paper "Extracting Drug-Enzyme Relation from Literature as Evidence for Drug Drug Interaction?" accepted and presented in the International Workshop on Vaccine and Drug Ontology Studies (VDOS)-in conjunction with the International Conference on Biomedical Ontology (ICBO), 2015.

 This package mainly consists of the source code for drug enzyme relation extraction using syntactic structure based rules and trigger words for each relation (i.e., induce, inhibit, substrate). Please find the machine learning algorithm package of the all-path graph kernel in the link https://sbmi.uth.edu/ccb/resources/ddi.html